1. "Mining and integration of pathway diagrams from imaging data", Bioinformatics, 2012;
doi: 10.1093/bioinformatics/bts01.
2. "IntegromeDB: an integrated system and biological search engine", BMC Genomics, 2012.
3. "BiologicalNetworks - tools enabling the integration of multiscale
data for the host-pathogen studies.", BMC Systems Biology, 2011.
4. "BiologicalNetworks 2.0 - an integrative view of genome biology data.", BMC Bioinformatics, 2010.
5. "Semantic Integration of Data on Transcriptional Regulation.", Bioinformatics, 2010.
6. "BiologicalNetworks: enabling systems-level studies of host-pathogen interactions", ECCB 2010.
7. "IntegromeDB: semantic integration of Transcriptional Regulation Data", RECOMB 2010.
8. "BioDB: An Ontology-Enhanced Information System
for Heterogeneous Biological Information", Proceedings of Data Knowl. Eng., 2010.
9. "BiologicalNetworks:
visualization and analysis tool for systems biology", Nucleic Acids Research, 2006.
10. "PathSys:
integrating molecular interaction graphs for systems biology", BMC Bioinformatics, 2006.
11. "Data Mining by Navigation -
an Experience with Systems Biology", PReMI'09.
Presentations and Demos at:
ISMB 2005 and 2011,
ECCB 2010 and RECOMB 2010,
PReMI'09,
CSH
Systems Biology Conference 2006, Chromatin Structure and Functions 2005.
